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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14315 and 14316 are separated by 476 nucleotides
14316 and 14317 are separated by 869 nucleotides
14317 and 14318 are separated by 1640 nucleotides
14318 and 14319 are separated by 197 nucleotides
mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1,298,029 to 1,303,055
14315
mRNA_5948: 14316 - HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,303,532 to 1,306,602
14316
mRNA_5949: 14317 - K01046 E3.1.1.3 triacylglycerol lipase, at 1,307,472 to 1,308,620
14317
mRNA_5950: 14318 - KOG2130 Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain, at 1,310,261 to 1,312,291
14318
mRNA_5951: 14319 - HMMPfam-Peptidase of plants and bacteria-PF04450, at 1,312,489 to 1,313,415
14319
Group
Condition
mRNA
_5947
mRNA
_5948
mRNA
_5949
mRNA
_5950
mRNA
_5951
14315
14316
14317
14318
14319
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.9
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.2
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.4
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.8
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.1
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
N.D.
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
N.D.
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
-0.3
+0.2
auxotrophy
YNB Glucose
+0.2
-0.3
N.D.
-0.3
+0.1
auxotrophy
Dropout Complete
+0.2
-0.1
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
N.D.
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
N.D.
-0.0
+0.3
growth on oleic acid
YNB Glucose
-0.7
+0.4
N.D.
+0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.5
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.7
N.D.
+0.4
+0.1
growth on ypd
YPD
+0.8
+0.7
N.D.
+0.0
-0.3
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