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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14318 and 14319 are separated by 197 nucleotides
14319 and 14320 are separated by 351 nucleotides
14320 and 14321 are separated by 270 nucleotides
14321 and 14322 are separated by 124 nucleotides
mRNA_5950: 14318 - KOG2130 Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain, at 1,310,261 to 1,312,291
14318
mRNA_5951: 14319 - HMMPfam-Peptidase of plants and bacteria-PF04450, at 1,312,489 to 1,313,415
14319
mRNA_5952: 14320 - K15198 BDP1, TFC5 transcription factor TFIIIB component B'', at 1,313,767 to 1,316,568
14320
mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1,316,839 to 1,317,817
14321
mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1,317,942 to 1,318,810
14322
Group
Condition
mRNA
_5950
mRNA
_5951
mRNA
_5952
mRNA
_5953
mRNA
_5954
14318
14319
14320
14321
14322
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
N.D.
-0.3
-0.3
auxotrophy
Dropout Complete
-0.5
+0.0
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose
-0.3
+0.1
N.D.
-0.1
-0.4
growth on ypd
YPD
+0.0
-0.3
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
N.D.
-0.0
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
N.D.
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
N.D.
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
N.D.
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.0
+0.4
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
N.D.
-0.1
+0.3
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