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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14320 and 14321 are separated by 270 nucleotides
14321 and 14322 are separated by 124 nucleotides
14322 and 14323 are separated by 986 nucleotides
14323 and 14324 are separated by 661 nucleotides
mRNA_5952: 14320 - K15198 BDP1, TFC5 transcription factor TFIIIB component B'', at 1,313,767 to 1,316,568
14320
mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1,316,839 to 1,317,817
14321
mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1,317,942 to 1,318,810
14322
mRNA_5955: 14323 - K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, at 1,319,797 to 1,323,881
14323
mRNA_5956: 14324 - KOG2238 Uncharacterized conserved protein TEX2, contains PH domain, at 1,324,543 to 1,328,402
14324
Group
Condition
mRNA
_5952
mRNA
_5953
mRNA
_5954
mRNA
_5955
mRNA
_5956
14320
14321
14322
14323
14324
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.3
N.D.
+0.0
auxotrophy
YNB Glucose
N.D.
-0.1
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.0
N.D.
-0.1
growth on ypd
YPD
N.D.
-0.2
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.6
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
N.D.
-0.1
auxotrophy
Dropout Complete
N.D.
-0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.1
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.1
N.D.
+0.5
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