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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14321 and 14322 are separated by 124 nucleotides
14322 and 14323 are separated by 986 nucleotides
14323 and 14324 are separated by 661 nucleotides
14324 and 14325 are separated by 836 nucleotides
mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1,316,839 to 1,317,817
14321
mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1,317,942 to 1,318,810
14322
mRNA_5955: 14323 - K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, at 1,319,797 to 1,323,881
14323
mRNA_5956: 14324 - KOG2238 Uncharacterized conserved protein TEX2, contains PH domain, at 1,324,543 to 1,328,402
14324
mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1,329,239 to 1,331,004
14325
Group
Condition
mRNA
_5953
mRNA
_5954
mRNA
_5955
mRNA
_5956
mRNA
_5957
14321
14322
14323
14324
14325
growth on ypd
YPD
-0.2
-0.0
N.D.
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose
-0.1
-0.4
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
N.D.
+0.0
+0.3
auxotrophy
Dropout Complete
-0.2
-0.0
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.6
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.0
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.0
N.D.
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
N.D.
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
N.D.
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
N.D.
+0.5
+0.4
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