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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14323 and 14324 are separated by 661 nucleotides
14324 and 14325 are separated by 836 nucleotides
14325 and 14326 are separated by 455 nucleotides
14326 and 14327 are separated by 496 nucleotides
mRNA_5955: 14323 - K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, at 1,319,797 to 1,323,881
14323
mRNA_5956: 14324 - KOG2238 Uncharacterized conserved protein TEX2, contains PH domain, at 1,324,543 to 1,328,402
14324
mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1,329,239 to 1,331,004
14325
mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,331,460 to 1,334,052
14326
mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1,334,549 to 1,337,487
14327
Group
Condition
mRNA
_5955
mRNA
_5956
mRNA
_5957
mRNA
_5958
mRNA
_5959
14323
14324
14325
14326
14327
auxotrophy
YNB Glucose
N.D.
+0.0
+0.0
-0.1
-0.3
auxotrophy
Dropout Complete
N.D.
+0.0
-0.0
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.2
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.1
-0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.0
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.3
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.3
+0.1
-0.2
growth on ypd
YPD
N.D.
-0.1
-0.5
+0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
-0.1
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.4
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.3
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.3
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.1
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.2
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.4
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.3
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.6
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+0.4
+0.2
+0.2
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