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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14325 and 14326 are separated by 455 nucleotides
14326 and 14327 are separated by 496 nucleotides
14327 and 14328 are separated by 311 nucleotides
14328 and 14329 are separated by 223 nucleotides
mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1,329,239 to 1,331,004
14325
mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,331,460 to 1,334,052
14326
mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1,334,549 to 1,337,487
14327
mRNA_5960: 14328 - Hypothetical Protein, at 1,337,799 to 1,338,235
14328
mRNA_5961: 14329 - HMMPfam-F-box-like-PF12937, at 1,338,459 to 1,339,688
14329
Group
Condition
mRNA
_5957
mRNA
_5958
mRNA
_5959
mRNA
_5960
mRNA
_5961
14325
14326
14327
14328
14329
auxotrophy
YNB Glucose
+0.0
-0.1
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.1
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.0
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.3
-0.5
-0.0
auxotrophy
Dropout Complete
-0.0
-0.1
-0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
-0.1
+0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.2
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
-0.2
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.0
-0.2
+0.0
+0.2
growth on ypd
YPD
-0.5
+0.5
+0.3
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
+0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.2
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
+0.0
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.2
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.2
+0.5
-0.7
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
-0.1
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.1
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.3
-0.0
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
+0.2
+0.3
+0.3
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