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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14339 and 14340 are separated by 266 nucleotides
14340 and 14341 are separated by 131 nucleotides
14341 and 14342 overlap by 4 nucleotides
14342 and 14343 are separated by 492 nucleotides
mRNA_5971: 14339 - Hypothetical Protein, at 1,353,644 to 1,354,802
14339
mRNA_5972: 14340 - K03243 EIF5B translation initiation factor 5B, at 1,355,069 to 1,359,492
14340
mRNA_5973: 14341 - Hypothetical Protein, at 1,359,624 to 1,360,109
14341
mRNA_5974: 14342 - SUPERFAMILY--SSF54909, at 1,360,106 to 1,360,539
14342
mRNA_5975: 14343 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,361,032 to 1,363,169
14343
Group
Condition
mRNA
_5971
mRNA
_5972
mRNA
_5973
mRNA
_5974
mRNA
_5975
14339
14340
14341
14342
14343
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.2
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.3
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.1
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
N.D.
+0.1
+0.0
+0.3
auxotrophy
YNB Glucose
-0.3
N.D.
+0.0
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.7
-0.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
+0.1
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.3
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.0
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.0
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.7
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.5
+0.0
+0.2
auxotrophy
Dropout Complete
-0.5
N.D.
+0.4
+0.1
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.4
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.6
+0.6
-0.2
growth on ypd
YPD
+0.3
N.D.
+0.6
+0.3
+0.4
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