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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14340 and 14341 are separated by 131 nucleotides
14341 and 14342 overlap by 4 nucleotides
14342 and 14343 are separated by 492 nucleotides
14343 and 14344 are separated by 340 nucleotides
mRNA_5972: 14340 - K03243 EIF5B translation initiation factor 5B, at 1,355,069 to 1,359,492
14340
mRNA_5973: 14341 - Hypothetical Protein, at 1,359,624 to 1,360,109
14341
mRNA_5974: 14342 - SUPERFAMILY--SSF54909, at 1,360,106 to 1,360,539
14342
mRNA_5975: 14343 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,361,032 to 1,363,169
14343
mRNA_5976: 14344 - SUPERFAMILY--SSF52047, at 1,363,510 to 1,364,859
14344
Group
Condition
mRNA
_5972
mRNA
_5973
mRNA
_5974
mRNA
_5975
mRNA
_5976
14340
14341
14342
14343
14344
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.4
-0.3
-0.8
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.2
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.2
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.2
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
+0.0
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
+0.6
-0.2
-0.6
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.2
+0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.0
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.3
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
-0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.7
-0.6
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.4
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.3
+0.3
+0.5
auxotrophy
Dropout Complete
N.D.
+0.4
+0.1
+0.6
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.2
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+0.0
+0.2
+0.4
growth on ypd
YPD
N.D.
+0.6
+0.3
+0.4
+0.2
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