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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14344 and 14345 are separated by 392 nucleotides
14345 and 14346 are separated by 724 nucleotides
14346 and 14347 are separated by 241 nucleotides
14347 and 14348 are separated by 285 nucleotides
mRNA_5976: 14344 - SUPERFAMILY--SSF52047, at 1,363,510 to 1,364,859
14344
mRNA_5977: 14345 - HMMPfam-F-box-like-PF12937, at 1,365,252 to 1,367,121
14345
mRNA_5978: 14346 - Hypothetical Protein, at 1,367,846 to 1,369,331
14346
mRNA_5979: 14347 - K12832 SF3B5, SF3B10 splicing factor 3B subunit 5, at 1,369,573 to 1,370,035
14347
mRNA_5980: 14348 - K12592 C1D, LRP1 exosome complex protein LRP1, at 1,370,321 to 1,371,409
14348
Group
Condition
mRNA
_5976
mRNA
_5977
mRNA
_5978
mRNA
_5979
mRNA
_5980
14344
14345
14346
14347
14348
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.0
-0.6
N.D.
-2.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.0
N.D.
-0.4
auxotrophy
YNB Glucose
-0.4
+0.3
-0.2
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.0
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
-0.4
N.D.
-0.2
auxotrophy
Dropout Complete
-0.3
+0.4
+0.0
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.3
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.4
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.5
+0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
-0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
+0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.4
-0.0
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.4
+1.0
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.0
+1.0
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
+0.6
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.7
N.D.
+0.9
growth on ypd
YPD
+0.2
+0.3
+0.7
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+1.1
N.D.
+0.9
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