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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14345 and 14346 are separated by 724 nucleotides
14346 and 14347 are separated by 241 nucleotides
14347 and 14348 are separated by 285 nucleotides
14348 and 14349 are separated by 584 nucleotides
mRNA_5977: 14345 - HMMPfam-F-box-like-PF12937, at 1,365,252 to 1,367,121
14345
mRNA_5978: 14346 - Hypothetical Protein, at 1,367,846 to 1,369,331
14346
mRNA_5979: 14347 - K12832 SF3B5, SF3B10 splicing factor 3B subunit 5, at 1,369,573 to 1,370,035
14347
mRNA_5980: 14348 - K12592 C1D, LRP1 exosome complex protein LRP1, at 1,370,321 to 1,371,409
14348
mRNA_5981: 14349 - Hypothetical Protein, at 1,371,994 to 1,372,598
14349
Group
Condition
mRNA
_5977
mRNA
_5978
mRNA
_5979
mRNA
_5980
mRNA
_5981
14345
14346
14347
14348
14349
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.6
N.D.
-2.0
-3.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.4
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
N.D.
-0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
+0.3
-0.2
N.D.
-0.6
+0.0
auxotrophy
Dropout Complete
+0.4
+0.0
N.D.
-0.7
-0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.4
N.D.
+0.3
-0.0
growth on oleic acid
YNB Glucose
+0.4
-0.0
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.0
N.D.
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
N.D.
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
N.D.
-0.2
+0.3
growth on ypd
YPD
+0.3
+0.7
N.D.
+0.5
-0.5
growth on ricinoleic acid
YNB Glucose
+0.2
+0.4
N.D.
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.6
N.D.
+0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+1.0
N.D.
+0.6
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+1.0
N.D.
+0.6
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+1.1
N.D.
+0.9
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.7
N.D.
+0.9
+0.6
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