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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14346 and 14347 are separated by 241 nucleotides
14347 and 14348 are separated by 285 nucleotides
14348 and 14349 are separated by 584 nucleotides
14349 and 14350 are separated by 847 nucleotides
mRNA_5978: 14346 - Hypothetical Protein, at 1,367,846 to 1,369,331
14346
mRNA_5979: 14347 - K12832 SF3B5, SF3B10 splicing factor 3B subunit 5, at 1,369,573 to 1,370,035
14347
mRNA_5980: 14348 - K12592 C1D, LRP1 exosome complex protein LRP1, at 1,370,321 to 1,371,409
14348
mRNA_5981: 14349 - Hypothetical Protein, at 1,371,994 to 1,372,598
14349
mRNA_5982: 14350 - KOG0379 Kelch repeat-containing proteins, at 1,373,446 to 1,378,307
14350
Group
Condition
mRNA
_5978
mRNA
_5979
mRNA
_5980
mRNA
_5981
mRNA
_5982
14346
14347
14348
14349
14350
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
-2.0
-3.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.4
+0.0
+0.1
auxotrophy
Dropout Complete
+0.0
N.D.
-0.7
-0.0
+0.2
auxotrophy
YNB Glucose
-0.2
N.D.
-0.6
+0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
+0.3
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
+0.3
-0.0
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.2
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.2
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.1
+0.6
+0.3
growth on ypd
YPD
+0.7
N.D.
+0.5
-0.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.2
+0.5
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
+0.1
+0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
N.D.
+0.6
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+1.1
N.D.
+0.9
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
N.D.
+0.6
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
+0.9
+0.6
+0.4
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