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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14356 and 14357 are separated by 1355 nucleotides
14357 and 14358 are separated by 340 nucleotides
14358 and 14359 are separated by 416 nucleotides
14359 and 14360 are separated by 350 nucleotides
mRNA_5988: 14356 - K06111 EXOC4, SEC8 exocyst complex component 4, at 1,386,489 to 1,391,232
14356
mRNA_5989: 14357 - SUPERFAMILY--SSF52047, at 1,392,588 to 1,397,872
14357
mRNA_5990: 14358 - Hypothetical Protein, at 1,398,213 to 1,398,410
14358
mRNA_5991: 14359 - Hypothetical Protein, at 1,398,827 to 1,400,392
14359
mRNA_5992: 14360 - Hypothetical Protein, at 1,400,743 to 1,402,011
14360
Group
Condition
mRNA
_5988
mRNA
_5989
mRNA
_5990
mRNA
_5991
mRNA
_5992
14356
14357
14358
14359
14360
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.0
-0.5
-3.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.6
-1.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.1
-0.9
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.2
-0.3
-0.1
auxotrophy
YNB Glucose
+0.6
+0.0
-0.8
-0.3
+0.2
auxotrophy
Dropout Complete
+0.6
+0.0
-0.5
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
-0.4
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.2
-0.6
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.5
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.9
+0.0
+0.3
-0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.5
-0.6
+0.3
growth on oleic acid
YNB Oleic Acid
+0.7
+0.0
+0.2
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
+0.2
+0.3
+0.1
growth on oleic acid
YNB Glucose
+0.6
+0.2
-0.1
+0.4
+0.0
growth on ypd
YPD
+0.1
+0.1
+1.7
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.9
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
-0.0
+0.6
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+1.0
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.6
-0.1
+0.7
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
+0.8
+0.6
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
+1.5
+0.2
+0.4
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