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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14360 and 14361 are separated by 172 nucleotides
14361 and 14362 are separated by 206 nucleotides
14362 and 14363 are separated by 150 nucleotides
14363 and 14364 are separated by 535 nucleotides
mRNA_5992: 14360 - Hypothetical Protein, at 1,400,743 to 1,402,011
14360
mRNA_5993: 14361 - K12847 USP39, SAD1 U4/U6.U5 tri-snRNP-associated protein 2, at 1,402,184 to 1,404,821
14361
mRNA_5994: 14362 - K14774 UTP25, DEF U3 small nucleolar RNA-associated protein 25, at 1,405,028 to 1,407,712
14362
mRNA_5995: 14363 - K14539 LSG1 large subunit GTPase 1, at 1,407,863 to 1,410,284
14363
mRNA_5996: 14364 - BLAST ran GTPase activating protein 1 [Capsaspora owcza..., at 1,410,820 to 1,412,089
14364
Group
Condition
mRNA
_5992
mRNA
_5993
mRNA
_5994
mRNA
_5995
mRNA
_5996
14360
14361
14362
14363
14364
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
N.D.
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
N.D.
N.D.
-0.9
growth on ypd
YPD
-0.5
N.D.
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
N.D.
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
N.D.
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.0
N.D.
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
+0.2
N.D.
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
N.D.
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
N.D.
N.D.
+0.5
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