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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14367 and 14368 are separated by 268 nucleotides
14368 and 14369 are separated by 180 nucleotides
14369 and 14370 are separated by 324 nucleotides
14370 and 14371 are separated by 432 nucleotides
mRNA_5999: 14367 - KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily, at 1,417,778 to 1,422,818
14367
mRNA_6000: 14368 - KOG2517 Ribulose kinase and related carbohydrate kinases, at 1,423,087 to 1,425,937
14368
mRNA_6001: 14369 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1,426,118 to 1,427,755
14369
mRNA_6002: 14370 - KOG4178 Soluble epoxide hydrolase, at 1,428,080 to 1,429,229
14370
mRNA_6003: 14371 - K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5, at 1,429,662 to 1,434,924
14371
Group
Condition
mRNA
_5999
mRNA
_6000
mRNA
_6001
mRNA
_6002
mRNA
_6003
14367
14368
14369
14370
14371
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.3
-0.2
-0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.2
-0.4
-0.7
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
+0.2
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.4
-0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
+0.4
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.7
-0.2
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.2
-0.3
N.D.
auxotrophy
YNB Glucose
-0.1
+0.1
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.0
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
-0.0
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
+0.2
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.4
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.4
+0.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.2
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.2
+0.3
+0.1
N.D.
growth on ypd
YPD
+1.0
+0.4
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+1.1
+0.0
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
-0.1
+0.0
+0.5
N.D.
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