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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14373 and 14374 are separated by 328 nucleotides
14374 and 14375 are separated by 243 nucleotides
14375 and 14376 are separated by 170 nucleotides
14376 and 14377 are separated by 497 nucleotides
mRNA_6005: 14373 - Hypothetical Protein, at 1,436,776 to 1,437,486
14373
mRNA_6006: 14374 - Hypothetical Protein, at 1,437,815 to 1,438,982
14374
mRNA_6007: 14375 - Hypothetical Protein, at 1,439,226 to 1,440,523
14375
mRNA_6008: 14376 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 1,440,694 to 1,441,642
14376
mRNA_6009: 14377 - K13939 FOL1 dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase, at 1,442,140 to 1,444,838
14377
Group
Condition
mRNA
_6005
mRNA
_6006
mRNA
_6007
mRNA
_6008
mRNA
_6009
14373
14374
14375
14376
14377
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.4
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.7
+0.3
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
+0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.4
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.3
+0.3
+0.4
N.D.
growth on ypd
YPD
-0.8
+0.4
+0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
-0.0
-0.1
N.D.
auxotrophy
Dropout Complete
+0.0
+0.4
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.5
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose
-0.4
+0.2
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
+0.9
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.1
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
+0.2
+0.1
N.D.
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