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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14374 and 14375 are separated by 243 nucleotides
14375 and 14376 are separated by 170 nucleotides
14376 and 14377 are separated by 497 nucleotides
14377 and 14378 are separated by 111 nucleotides
mRNA_6006: 14374 - Hypothetical Protein, at 1,437,815 to 1,438,982
14374
mRNA_6007: 14375 - Hypothetical Protein, at 1,439,226 to 1,440,523
14375
mRNA_6008: 14376 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 1,440,694 to 1,441,642
14376
mRNA_6009: 14377 - K13939 FOL1 dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase, at 1,442,140 to 1,444,838
14377
mRNA_6010: 14378 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF103473, at 1,444,950 to 1,447,121
14378
Group
Condition
mRNA
_6006
mRNA
_6007
mRNA
_6008
mRNA
_6009
mRNA
_6010
14374
14375
14376
14377
14378
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.2
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
+0.3
N.D.
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.1
N.D.
-0.3
auxotrophy
Dropout Complete
+0.4
-0.2
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.9
-0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
+0.2
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.4
+0.3
-0.2
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.0
N.D.
+0.2
growth on ypd
YPD
+0.4
+0.4
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.3
+0.2
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose
+0.2
+0.2
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.2
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.6
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
+0.4
N.D.
+0.5
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