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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14375 and 14376 are separated by 170 nucleotides
14376 and 14377 are separated by 497 nucleotides
14377 and 14378 are separated by 111 nucleotides
14378 and 14379 are separated by 508 nucleotides
mRNA_6007: 14375 - Hypothetical Protein, at 1,439,226 to 1,440,523
14375
mRNA_6008: 14376 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 1,440,694 to 1,441,642
14376
mRNA_6009: 14377 - K13939 FOL1 dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase, at 1,442,140 to 1,444,838
14377
mRNA_6010: 14378 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF103473, at 1,444,950 to 1,447,121
14378
mRNA_6011: 14379 - HMMPfam-F-box-like-PF12937, at 1,447,630 to 1,450,531
14379
Group
Condition
mRNA
_6007
mRNA
_6008
mRNA
_6009
mRNA
_6010
mRNA
_6011
14375
14376
14377
14378
14379
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
N.D.
-0.8
-0.1
auxotrophy
Dropout Complete
-0.2
-0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
-0.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
N.D.
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
N.D.
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
N.D.
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
N.D.
-0.3
+0.3
auxotrophy
YNB Glucose
+0.2
+0.1
N.D.
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.3
-0.2
N.D.
+0.3
+0.0
growth on ypd
YPD
+0.4
-0.2
N.D.
-0.3
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.2
N.D.
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.6
N.D.
-0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
N.D.
+0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
N.D.
+0.6
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.4
N.D.
+0.5
+0.3
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