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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14378 and 14379 are separated by 508 nucleotides
14379 and 14380 are separated by 480 nucleotides
14380 and 14381 are separated by 325 nucleotides
14381 and 14382 are separated by 125 nucleotides
mRNA_6010: 14378 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF103473, at 1,444,950 to 1,447,121
14378
mRNA_6011: 14379 - HMMPfam-F-box-like-PF12937, at 1,447,630 to 1,450,531
14379
mRNA_6012: 14380 - Hypothetical Protein, at 1,451,012 to 1,452,136
14380
mRNA_6013: 14381 - Hypothetical Protein, at 1,452,462 to 1,453,877
14381
mRNA_6014: 14382 - K14785 ESF2, ABT1 ESF2/ABP1 family protein, at 1,454,003 to 1,455,202
14382
Group
Condition
mRNA
_6010
mRNA
_6011
mRNA
_6012
mRNA
_6013
mRNA
_6014
14378
14379
14380
14381
14382
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.1
+0.0
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.6
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.4
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-0.2
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
-0.1
-0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
-0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.3
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.1
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.0
-0.3
-0.4
N.D.
auxotrophy
YNB Glucose
+0.0
+0.1
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.3
-0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.4
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.3
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
+0.4
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
+0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.0
+0.6
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
-0.3
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.4
+0.2
-0.5
N.D.
growth on ypd
YPD
-0.3
+0.7
+0.3
+0.3
N.D.
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