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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14388 and 14389 are separated by 325 nucleotides
14389 and 14390 are separated by 499 nucleotides
14390 and 14391 are separated by 309 nucleotides
14391 and 14392 are separated by 288 nucleotides
mRNA_6020: 14388 - SUPERFAMILY--SSF52047, at 1,464,544 to 1,465,976
14388
mRNA_6021: 14389 - Hypothetical Protein, at 1,466,302 to 1,468,008
14389
mRNA_6022: 14390 - SUPERFAMILY--SSF52047, at 1,468,508 to 1,469,944
14390
mRNA_6023: 14391 - K03293 TC.AAT amino acid transporter, AAT family, at 1,470,254 to 1,472,430
14391
mRNA_6024: 14392 - Hypothetical Protein, at 1,472,719 to 1,473,425
14392
Group
Condition
mRNA
_6020
mRNA
_6021
mRNA
_6022
mRNA
_6023
mRNA
_6024
14388
14389
14390
14391
14392
growth on ricinoleic acid
YNB Glucose
-1.2
-0.1
+0.0
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
-0.0
+0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.6
-0.1
-0.2
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
-0.1
+0.3
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
+0.0
+0.1
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-1.3
-0.1
+0.4
-0.0
+0.2
auxotrophy
YNB Glucose
-0.6
-0.1
+0.1
-0.3
+0.2
auxotrophy
Dropout Complete
-0.5
-0.0
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.0
-0.0
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
+0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.1
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.4
-0.0
+0.3
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
+0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
+0.1
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.5
-0.0
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.1
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
+0.4
+0.7
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.2
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.1
+0.4
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+1.0
-0.0
+0.2
+0.1
+0.5
growth on ypd
YPD
+1.8
-0.1
+0.1
-0.1
+0.4
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