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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14390 and 14391 are separated by 309 nucleotides
14391 and 14392 are separated by 288 nucleotides
14392 and 14393 are separated by 211 nucleotides
14393 and 14394 are separated by 613 nucleotides
mRNA_6022: 14390 - SUPERFAMILY--SSF52047, at 1,468,508 to 1,469,944
14390
mRNA_6023: 14391 - K03293 TC.AAT amino acid transporter, AAT family, at 1,470,254 to 1,472,430
14391
mRNA_6024: 14392 - Hypothetical Protein, at 1,472,719 to 1,473,425
14392
mRNA_6025: 14393 - KOG0324 Uncharacterized conserved protein, at 1,473,637 to 1,475,874
14393
mRNA_6026: 14394 - HMMPfam-Zeta toxin-PF06414,SUPERFAMILY--SSF52540, at 1,476,488 to 1,478,196
14394
Group
Condition
mRNA
_6022
mRNA
_6023
mRNA
_6024
mRNA
_6025
mRNA
_6026
14390
14391
14392
14393
14394
growth on ricinoleic acid
YNB Glucose
+0.0
-0.5
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
-0.2
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose
+0.1
-0.3
+0.2
+0.4
N.D.
auxotrophy
Dropout Complete
+0.2
-0.1
+0.2
+0.3
N.D.
growth on ypd
YPD
+0.1
-0.1
+0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.4
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
+0.3
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.7
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
+0.3
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.3
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
+0.2
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.5
+0.3
N.D.
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