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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14391 and 14392 are separated by 288 nucleotides
14392 and 14393 are separated by 211 nucleotides
14393 and 14394 are separated by 613 nucleotides
14394 and 14395 are separated by 780 nucleotides
mRNA_6023: 14391 - K03293 TC.AAT amino acid transporter, AAT family, at 1,470,254 to 1,472,430
14391
mRNA_6024: 14392 - Hypothetical Protein, at 1,472,719 to 1,473,425
14392
mRNA_6025: 14393 - KOG0324 Uncharacterized conserved protein, at 1,473,637 to 1,475,874
14393
mRNA_6026: 14394 - HMMPfam-Zeta toxin-PF06414,SUPERFAMILY--SSF52540, at 1,476,488 to 1,478,196
14394
mRNA_6027: 14395 - HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797, at 1,478,977 to 1,480,198
14395
Group
Condition
mRNA
_6023
mRNA
_6024
mRNA
_6025
mRNA
_6026
mRNA
_6027
14391
14392
14393
14394
14395
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.1
-0.4
N.D.
-1.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
+0.3
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
-0.3
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.0
+0.1
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.1
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.0
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
-0.1
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.1
N.D.
-0.1
auxotrophy
Dropout Complete
-0.1
+0.2
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose
-0.3
+0.2
+0.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.0
N.D.
+0.1
growth on ypd
YPD
-0.1
+0.4
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.2
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
+0.0
N.D.
+1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.0
N.D.
+2.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
+0.3
N.D.
+1.7
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