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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14392 and 14393 are separated by 211 nucleotides
14393 and 14394 are separated by 613 nucleotides
14394 and 14395 are separated by 780 nucleotides
14395 and 14396 are separated by 26 nucleotides
mRNA_6024: 14392 - Hypothetical Protein, at 1,472,719 to 1,473,425
14392
mRNA_6025: 14393 - KOG0324 Uncharacterized conserved protein, at 1,473,637 to 1,475,874
14393
mRNA_6026: 14394 - HMMPfam-Zeta toxin-PF06414,SUPERFAMILY--SSF52540, at 1,476,488 to 1,478,196
14394
mRNA_6027: 14395 - HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797, at 1,478,977 to 1,480,198
14395
mRNA_6028: 14396 - KOG2521 Uncharacterized conserved protein, at 1,480,225 to 1,481,311
14396
Group
Condition
mRNA
_6024
mRNA
_6025
mRNA
_6026
mRNA
_6027
mRNA
_6028
14392
14393
14394
14395
14396
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
N.D.
-1.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
N.D.
-0.7
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
N.D.
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
N.D.
-0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
N.D.
-0.5
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
-0.4
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
+0.2
+0.3
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
N.D.
+0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
N.D.
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.2
+0.0
N.D.
+0.1
+0.2
growth on ypd
YPD
+0.4
+0.1
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
+0.2
+0.4
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
N.D.
+0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
N.D.
+1.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
+1.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
+2.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
N.D.
+1.7
+0.0
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