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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14394 and 14395 are separated by 780 nucleotides
14395 and 14396 are separated by 26 nucleotides
14396 and 14397 are separated by 203 nucleotides
14397 and 14398 are separated by 252 nucleotides
mRNA_6026: 14394 - HMMPfam-Zeta toxin-PF06414,SUPERFAMILY--SSF52540, at 1,476,488 to 1,478,196
14394
mRNA_6027: 14395 - HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797, at 1,478,977 to 1,480,198
14395
mRNA_6028: 14396 - KOG2521 Uncharacterized conserved protein, at 1,480,225 to 1,481,311
14396
mRNA_6029: 14397 - K01056 PTH1, pth, spoVC peptidyl-tRNA hydrolase, PTH1 family, at 1,481,515 to 1,482,449
14397
mRNA_6030: 14398 - KOG4036 Uncharacterized conserved protein, at 1,482,702 to 1,483,838
14398
Group
Condition
mRNA
_6026
mRNA
_6027
mRNA
_6028
mRNA
_6029
mRNA
_6030
14394
14395
14396
14397
14398
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.6
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.0
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
+0.1
N.D.
+0.3
auxotrophy
Dropout Complete
N.D.
-0.1
-0.0
N.D.
-0.0
growth on ypd
YPD
N.D.
+0.2
-0.1
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.0
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.1
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
+0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.4
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+1.6
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+2.1
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+1.7
+0.0
N.D.
+0.4
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