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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14413 and 14414 are separated by 580 nucleotides
14414 and 14415 are separated by 322 nucleotides
14415 and 14416 are separated by 287 nucleotides
14416 and 14417 are separated by 539 nucleotides
mRNA_6045: 14413 - SUPERFAMILY--SSF54928, at 1,512,060 to 1,513,119
14413
mRNA_6046: 14414 - Hypothetical Protein, at 1,513,700 to 1,515,000
14414
mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1,515,323 to 1,516,944
14415
mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1,517,232 to 1,519,356
14416
mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1,519,896 to 1,521,308
14417
Group
Condition
mRNA
_6045
mRNA
_6046
mRNA
_6047
mRNA
_6048
mRNA
_6049
14413
14414
14415
14416
14417
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.8
+0.2
+0.0
auxotrophy
Dropout Complete
+0.1
+0.0
-1.2
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
+0.3
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
-0.6
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
-0.6
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.5
-0.1
-0.4
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
-1.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.2
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.6
+0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
-0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.2
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
-0.4
-0.4
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
-0.2
+0.0
auxotrophy
YNB Glucose
-0.0
+0.2
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
+0.2
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.2
-0.3
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.3
+0.0
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.4
+0.0
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.4
-0.0
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
+0.2
+0.3
+0.0
growth on ypd
YPD
+0.6
+0.5
-0.4
+0.5
+0.2
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