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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14414 and 14415 are separated by 322 nucleotides
14415 and 14416 are separated by 287 nucleotides
14416 and 14417 are separated by 539 nucleotides
14417 and 14418 are separated by 262 nucleotides
mRNA_6046: 14414 - Hypothetical Protein, at 1,513,700 to 1,515,000
14414
mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1,515,323 to 1,516,944
14415
mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1,517,232 to 1,519,356
14416
mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1,519,896 to 1,521,308
14417
mRNA_6050: 14418 - K03942 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, at 1,521,571 to 1,523,726
14418
Group
Condition
mRNA
_6046
mRNA
_6047
mRNA
_6048
mRNA
_6049
mRNA
_6050
14414
14415
14416
14417
14418
auxotrophy
Dropout Complete
+0.0
-1.2
+0.3
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.6
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.8
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-1.1
+0.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.0
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.1
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.4
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-0.4
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
-0.4
+1.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
-0.1
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.4
+0.5
+0.1
N.D.
auxotrophy
YNB Glucose
+0.2
-0.3
+0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.2
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.0
+0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.0
+0.0
+0.2
N.D.
growth on ypd
YPD
+0.5
-0.4
+0.5
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
+0.3
+0.0
N.D.
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