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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14416 and 14417 are separated by 539 nucleotides
14417 and 14418 are separated by 262 nucleotides
14418 and 14419 are separated by 360 nucleotides
14419 and 14420 are separated by 199 nucleotides
mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1,517,232 to 1,519,356
14416
mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1,519,896 to 1,521,308
14417
mRNA_6050: 14418 - K03942 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, at 1,521,571 to 1,523,726
14418
mRNA_6051: 14419 - Hypothetical Protein, at 1,524,087 to 1,525,475
14419
mRNA_6052: 14420 - Hypothetical Protein, at 1,525,675 to 1,528,680
14420
Group
Condition
mRNA
_6048
mRNA
_6049
mRNA
_6050
mRNA
_6051
mRNA
_6052
14416
14417
14418
14419
14420
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
N.D.
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.3
N.D.
-0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose
+0.2
+0.0
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
N.D.
-0.1
-0.1
auxotrophy
Dropout Complete
+0.3
-0.1
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+1.0
N.D.
-0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
N.D.
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
N.D.
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
+0.8
N.D.
-0.4
+0.2
growth on oleic acid
YNB Glucose
+0.5
+0.1
N.D.
-0.1
+0.2
growth on ypd
YPD
+0.5
+0.2
N.D.
+0.3
-0.0
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