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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14424 and 14425 overlap by 13 nucleotides
14425 and 14426 are separated by 232 nucleotides
14426 and 14427 are separated by 816 nucleotides
14427 and 14428 are separated by 474 nucleotides
mRNA_6056: 14424 - K13996 EPS1 protein disulfide-isomerase, at 1,537,539 to 1,540,392
14424
mRNA_6057: 14425 - Hypothetical Protein, at 1,540,380 to 1,540,856
14425
mRNA_6058: 14426 - SUPERFAMILY--SSF52047, at 1,541,089 to 1,542,626
14426
mRNA_6059: 14427 - SUPERFAMILY--SSF52047, at 1,543,443 to 1,544,992
14427
mRNA_6060: 14428 - K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7, at 1,545,467 to 1,548,419
14428
Group
Condition
mRNA
_6056
mRNA
_6057
mRNA
_6058
mRNA
_6059
mRNA
_6060
14424
14425
14426
14427
14428
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.6
-0.6
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.4
-0.2
+0.1
N.D.
growth on ypd
YPD
+0.1
-0.9
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.4
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.4
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
+0.1
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.0
+0.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.0
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.6
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
+0.4
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.7
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
+0.6
+0.2
N.D.
auxotrophy
Dropout Complete
+0.1
+1.0
+0.3
-0.0
N.D.
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