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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14425 and 14426 are separated by 232 nucleotides
14426 and 14427 are separated by 816 nucleotides
14427 and 14428 are separated by 474 nucleotides
14428 and 14429 are separated by 309 nucleotides
mRNA_6057: 14425 - Hypothetical Protein, at 1,540,380 to 1,540,856
14425
mRNA_6058: 14426 - SUPERFAMILY--SSF52047, at 1,541,089 to 1,542,626
14426
mRNA_6059: 14427 - SUPERFAMILY--SSF52047, at 1,543,443 to 1,544,992
14427
mRNA_6060: 14428 - K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7, at 1,545,467 to 1,548,419
14428
mRNA_6061: 14429 - KOG3772 M-phase inducer phosphatase, at 1,548,729 to 1,549,422
14429
Group
Condition
mRNA
_6057
mRNA
_6058
mRNA
_6059
mRNA
_6060
mRNA
_6061
14425
14426
14427
14428
14429
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.6
+0.2
N.D.
+0.0
growth on ypd
YPD
-0.9
+0.2
+0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
+0.3
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.4
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.2
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.4
-0.1
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.4
+0.3
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.1
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.2
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.1
N.D.
+0.4
auxotrophy
YNB Glucose
+0.1
+0.6
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
+0.2
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
+0.3
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
+0.3
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.0
+0.1
N.D.
+0.2
auxotrophy
Dropout Complete
+1.0
+0.3
-0.0
N.D.
-0.2
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