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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14428 and 14429 are separated by 309 nucleotides
14429 and 14430 are separated by 525 nucleotides
14430 and 14431 are separated by 285 nucleotides
14431 and 14432 are separated by 39 nucleotides
mRNA_6060: 14428 - K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7, at 1,545,467 to 1,548,419
14428
mRNA_6061: 14429 - KOG3772 M-phase inducer phosphatase, at 1,548,729 to 1,549,422
14429
mRNA_6062: 14430 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 1,549,948 to 1,551,724
14430
mRNA_6063: 14431 - KOG0519 Sensory transduction histidine kinase, at 1,552,010 to 1,556,333
14431
mRNA_6064: 14432 - Hypothetical Protein, at 1,556,373 to 1,558,599
14432
Group
Condition
mRNA
_6060
mRNA
_6061
mRNA
_6062
mRNA
_6063
mRNA
_6064
14428
14429
14430
14431
14432
growth on ypd
YPD
N.D.
-0.3
-0.4
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.2
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
-0.2
-0.2
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.1
+0.2
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
-0.1
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.2
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.1
+0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.2
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.7
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.5
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.2
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.4
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.3
+0.1
+0.3
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