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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14430 and 14431 are separated by 285 nucleotides
14431 and 14432 are separated by 39 nucleotides
14432 and 14433 are separated by 1776 nucleotides
14433 and 14434 are separated by 395 nucleotides
mRNA_6062: 14430 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 1,549,948 to 1,551,724
14430
mRNA_6063: 14431 - KOG0519 Sensory transduction histidine kinase, at 1,552,010 to 1,556,333
14431
mRNA_6064: 14432 - Hypothetical Protein, at 1,556,373 to 1,558,599
14432
mRNA_6065: 14433 - KOG1082 Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing, at 1,560,376 to 1,561,281
14433
mRNA_6066: 14434 - K20363 YIP1, YIPF5 protein transport protein YIP1, at 1,561,677 to 1,562,701
14434
Group
Condition
mRNA
_6062
mRNA
_6063
mRNA
_6064
mRNA
_6065
mRNA
_6066
14430
14431
14432
14433
14434
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.1
-0.5
N.D.
growth on ypd
YPD
-0.4
-0.1
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose
-0.2
-0.0
+0.0
-0.4
N.D.
auxotrophy
Dropout Complete
-0.1
+0.1
+0.0
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
-0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.1
-0.0
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
+0.0
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.0
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
+0.0
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.0
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.3
+0.2
N.D.
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