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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14432 and 14433 are separated by 1776 nucleotides
14433 and 14434 are separated by 395 nucleotides
14434 and 14435 are separated by 98 nucleotides
14435 and 14436 are separated by 249 nucleotides
mRNA_6064: 14432 - Hypothetical Protein, at 1,556,373 to 1,558,599
14432
mRNA_6065: 14433 - KOG1082 Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing, at 1,560,376 to 1,561,281
14433
mRNA_6066: 14434 - K20363 YIP1, YIPF5 protein transport protein YIP1, at 1,561,677 to 1,562,701
14434
mRNA_6067: 14435 - K14798 LTV1 protein LTV1, at 1,562,800 to 1,564,980
14435
mRNA_6068: 14436 - K01855 PUS3, DEG1 tRNA pseudouridine38/39 synthase, at 1,565,230 to 1,567,371
14436
Group
Condition
mRNA
_6064
mRNA
_6065
mRNA
_6066
mRNA
_6067
mRNA
_6068
14432
14433
14434
14435
14436
auxotrophy
YNB Glucose
+0.0
-0.4
N.D.
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.5
N.D.
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
N.D.
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.0
-0.2
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
+0.0
-0.4
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
N.D.
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.5
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
N.D.
+0.2
growth on ypd
YPD
-0.1
-0.1
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
N.D.
N.D.
+0.0
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