Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14447 and 14448 are separated by 342 nucleotides14448 and 14449 are separated by 86 nucleotides14449 and 14450 are separated by 764 nucleotides14450 and 14451 are separated by 194 nucleotides mRNA_6079: 14447 - K12776 MEK1 meiosis-specific serine/threonine-protein kinase MEK1, at 1,594,108 to 1,596,398 14447 mRNA_6080: 14448 - KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans), at 1,596,741 to 1,598,901 14448 mRNA_6081: 14449 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,598,988 to 1,602,551 14449 mRNA_6082: 14450 - K03010 RPB2, POLR2B DNA-directed RNA polymerase II subunit RPB2, at 1,603,316 to 1,607,774 14450 mRNA_6083: 14451 - Hypothetical Protein, at 1,607,969 to 1,610,179 14451
Group Condition mRNA_6079 mRNA_6080 mRNA_6081 mRNA_6082 mRNA_6083
14447 14448 14449 14450 14451
growth on ypd YPD -0.3 N.D. -0.0 N.D. -0.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 N.D. +0.0 N.D. -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 N.D. +0.4 N.D. -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. -0.1 N.D. +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 N.D. +0.1 N.D. -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. +0.2 N.D. -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 N.D. +0.2 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 N.D. +0.0 N.D. +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 N.D. +0.1 N.D. -0.0
growth on oleic acid YNB Oleic Acid -0.2 N.D. -0.1 N.D. +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 N.D. +0.2 N.D. -0.2
growth on ricinoleic acid YNB Glucose -0.2 N.D. +0.2 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy -0.0 N.D. +0.2 N.D. -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.1 N.D. +0.3 N.D. -0.0
auxotrophy YNB Glucose -0.1 N.D. +0.0 N.D. +0.4
auxotrophy Dropout Complete -0.1 N.D. +0.0 N.D. +0.4
ypd buoyancy 40 hrs Low Buoyancy -0.0 N.D. +0.3 N.D. +0.0
auxotrophy YNB Glucose 75mM Arginine -0.2 N.D. +0.2 N.D. +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 N.D. +0.2 N.D. +0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. +0.2 N.D. +0.3
growth on oleic acid YNB Glucose -0.2 N.D. +0.2 N.D. +0.5
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