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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14451 and 14452 are separated by 164 nucleotides
14452 and 14453 are separated by 677 nucleotides
14453 and 14454 are separated by 687 nucleotides
14454 and 14455 are separated by 277 nucleotides
mRNA_6083: 14451 - Hypothetical Protein, at 1,607,969 to 1,610,179
14451
mRNA_6084: 14452 - SUPERFAMILY--SSF54427, at 1,610,344 to 1,611,077
14452
mRNA_6085: 14453 - HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230, at 1,611,755 to 1,615,148
14453
mRNA_6086: 14454 - HMMPfam-Cutinase-PF01083,SUPERFAMILY--SSF53474, at 1,615,836 to 1,616,999
14454
mRNA_6087: 14455 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,617,277 to 1,619,252
14455
Group
Condition
mRNA
_6083
mRNA
_6084
mRNA
_6085
mRNA
_6086
mRNA
_6087
14451
14452
14453
14454
14455
growth on ypd
YPD
-0.5
-0.2
N.D.
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.0
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-0.5
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.0
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
N.D.
+0.4
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.4
N.D.
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.5
-0.0
N.D.
+0.0
-0.0
auxotrophy
Dropout Complete
+0.4
+0.3
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
N.D.
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
N.D.
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
N.D.
+0.2
+0.4
auxotrophy
YNB Glucose
+0.4
+0.3
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
N.D.
+0.2
+0.1
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