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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14452 and 14453 are separated by 677 nucleotides
14453 and 14454 are separated by 687 nucleotides
14454 and 14455 are separated by 277 nucleotides
14455 and 14456 are separated by 461 nucleotides
mRNA_6084: 14452 - SUPERFAMILY--SSF54427, at 1,610,344 to 1,611,077
14452
mRNA_6085: 14453 - HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230, at 1,611,755 to 1,615,148
14453
mRNA_6086: 14454 - HMMPfam-Cutinase-PF01083,SUPERFAMILY--SSF53474, at 1,615,836 to 1,616,999
14454
mRNA_6087: 14455 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,617,277 to 1,619,252
14455
mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,619,714 to 1,621,699
14456
Group
Condition
mRNA
_6084
mRNA
_6085
mRNA
_6086
mRNA
_6087
mRNA
_6088
14452
14453
14454
14455
14456
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.0
-0.1
-0.3
growth on ypd
YPD
-0.2
N.D.
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.0
-0.2
-0.0
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.3
+0.4
-0.0
auxotrophy
Dropout Complete
+0.3
N.D.
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.4
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.5
+0.5
+0.6
auxotrophy
YNB Glucose
+0.3
N.D.
-0.0
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
+0.4
+0.1
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