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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14453 and 14454 are separated by 687 nucleotides
14454 and 14455 are separated by 277 nucleotides
14455 and 14456 are separated by 461 nucleotides
14456 and 14457 are separated by 440 nucleotides
mRNA_6085: 14453 - HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230, at 1,611,755 to 1,615,148
14453
mRNA_6086: 14454 - HMMPfam-Cutinase-PF01083,SUPERFAMILY--SSF53474, at 1,615,836 to 1,616,999
14454
mRNA_6087: 14455 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,617,277 to 1,619,252
14455
mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,619,714 to 1,621,699
14456
mRNA_6089: 14457 - KOG3098 Uncharacterized conserved protein, at 1,622,140 to 1,623,844
14457
Group
Condition
mRNA
_6085
mRNA
_6086
mRNA
_6087
mRNA
_6088
mRNA
_6089
14453
14454
14455
14456
14457
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.0
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.1
+0.1
-0.4
auxotrophy
Dropout Complete
N.D.
-0.3
+0.1
+0.1
-0.1
growth on ypd
YPD
N.D.
-0.2
-0.0
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.1
-0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.1
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.4
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.2
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose
N.D.
-0.0
+0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.4
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.2
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.5
+0.6
+0.5
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