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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14456 and 14457 are separated by 440 nucleotides
14457 and 14458 are separated by 617 nucleotides
14458 and 14459 are separated by 124 nucleotides
14459 and 14460 are separated by 207 nucleotides
mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,619,714 to 1,621,699
14456
mRNA_6089: 14457 - KOG3098 Uncharacterized conserved protein, at 1,622,140 to 1,623,844
14457
mRNA_6090: 14458 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,624,462 to 1,625,947
14458
mRNA_6091: 14459 - KOG1515 Arylacetamide deacetylase, at 1,626,072 to 1,627,990
14459
mRNA_6092: 14460 - K06639 CDC14 cell division cycle 14, at 1,628,198 to 1,631,375
14460
Group
Condition
mRNA
_6088
mRNA
_6089
mRNA
_6090
mRNA
_6091
mRNA
_6092
14456
14457
14458
14459
14460
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.3
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
-0.4
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
-0.1
-0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.3
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
+0.3
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
-0.0
-0.1
+0.5
growth on ypd
YPD
-0.1
+0.1
+0.0
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.3
+0.0
-0.0
auxotrophy
YNB Glucose
+0.1
-0.1
-0.1
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.5
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.1
+0.0
+0.2
auxotrophy
Dropout Complete
+0.1
-0.1
-0.0
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
+0.4
-0.3
+0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.3
-0.0
+0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
-0.5
+0.5
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.5
+0.1
+0.3
+0.4
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