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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14458 and 14459 are separated by 124 nucleotides
14459 and 14460 are separated by 207 nucleotides
14460 and 14461 are separated by 250 nucleotides
14461 and 14462 are separated by 175 nucleotides
mRNA_6090: 14458 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,624,462 to 1,625,947
14458
mRNA_6091: 14459 - KOG1515 Arylacetamide deacetylase, at 1,626,072 to 1,627,990
14459
mRNA_6092: 14460 - K06639 CDC14 cell division cycle 14, at 1,628,198 to 1,631,375
14460
mRNA_6093: 14461 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1,631,626 to 1,633,865
14461
mRNA_6094: 14462 - K16738 NDE1, NUDE nuclear distribution protein NudE, at 1,634,041 to 1,636,155
14462
Group
Condition
mRNA
_6090
mRNA
_6091
mRNA
_6092
mRNA
_6093
mRNA
_6094
14458
14459
14460
14461
14462
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
+0.2
-0.4
-0.0
growth on oleic acid
YNB Glucose
-0.3
-0.3
+0.3
-0.1
+0.1
growth on ypd
YPD
+0.0
+0.2
-0.1
-0.1
-0.2
auxotrophy
Dropout Complete
-0.0
+0.3
+0.2
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.4
-0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
+0.4
+0.1
-0.2
auxotrophy
YNB Glucose
-0.1
+0.0
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
+0.3
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.5
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.4
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
+0.2
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
+0.0
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
-0.0
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
+0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.2
-0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.5
+0.8
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
+0.6
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.4
+0.4
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.1
+0.0
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.4
+0.2
+0.5
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