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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14461 and 14462 are separated by 175 nucleotides
14462 and 14463 are separated by 793 nucleotides
14463 and 14464 are separated by 918 nucleotides
14464 and 14465 are separated by 288 nucleotides
mRNA_6093: 14461 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1,631,626 to 1,633,865
14461
mRNA_6094: 14462 - K16738 NDE1, NUDE nuclear distribution protein NudE, at 1,634,041 to 1,636,155
14462
mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,636,949 to 1,643,604
14463
mRNA_6096: 14464 - K05721 FGD2 FYVE, RhoGEF and PH domain containing 2, at 1,644,523 to 1,649,566
14464
mRNA_6097: 14465 - KOG4313 Thiamine pyrophosphokinase, at 1,649,855 to 1,650,926
14465
Group
Condition
mRNA
_6093
mRNA
_6094
mRNA
_6095
mRNA
_6096
mRNA
_6097
14461
14462
14463
14464
14465
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.4
+0.0
-0.1
growth on ypd
YPD
-0.1
-0.2
+0.1
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.3
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
-0.0
+0.2
+0.2
+0.2
auxotrophy
Dropout Complete
-0.2
-0.3
+0.3
-0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
+0.2
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.0
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
+0.2
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.0
+0.3
+0.0
auxotrophy
YNB Glucose
+0.1
-0.0
+0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.5
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
+0.4
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
+0.3
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.2
+0.3
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
+0.1
-0.0
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.0
+0.3
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
+0.3
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.5
+0.1
+0.5
-0.0
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