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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14463 and 14464 are separated by 918 nucleotides
14464 and 14465 are separated by 288 nucleotides
14465 and 14466 overlap by 38 nucleotides
14466 and 14467 are separated by 243 nucleotides
mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,636,949 to 1,643,604
14463
mRNA_6096: 14464 - K05721 FGD2 FYVE, RhoGEF and PH domain containing 2, at 1,644,523 to 1,649,566
14464
mRNA_6097: 14465 - KOG4313 Thiamine pyrophosphokinase, at 1,649,855 to 1,650,926
14465
mRNA_6098: 14466 - Hypothetical Protein, at 1,650,889 to 1,652,213
14466
mRNA_6099: 14467 - KOG3091 Nuclear pore complex, p54 component (sc Nup57), at 1,652,457 to 1,654,232
14467
Group
Condition
mRNA
_6095
mRNA
_6096
mRNA
_6097
mRNA
_6098
mRNA
_6099
14463
14464
14465
14466
14467
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.0
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.2
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.2
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
+0.0
-0.3
N.D.
growth on ypd
YPD
+0.1
+0.0
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
-0.0
-0.0
N.D.
auxotrophy
YNB Glucose
+0.2
+0.0
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
-0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.0
+0.1
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
+0.2
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.0
+0.3
+0.4
N.D.
auxotrophy
Dropout Complete
+0.3
-0.0
+0.4
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.1
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
+0.8
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
+0.2
+0.5
N.D.
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