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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14465 and 14466 overlap by 38 nucleotides
14466 and 14467 are separated by 243 nucleotides
14467 and 14468 are separated by 917 nucleotides
14468 and 14469 are separated by 1289 nucleotides
mRNA_6097: 14465 - KOG4313 Thiamine pyrophosphokinase, at 1,649,855 to 1,650,926
14465
mRNA_6098: 14466 - Hypothetical Protein, at 1,650,889 to 1,652,213
14466
mRNA_6099: 14467 - KOG3091 Nuclear pore complex, p54 component (sc Nup57), at 1,652,457 to 1,654,232
14467
mRNA_6100: 14468 - Hypothetical Protein, at 1,655,150 to 1,656,189
14468
mRNA_6101: 14469 - KOG1303 Amino acid transporters, at 1,657,479 to 1,659,479
14469
Group
Condition
mRNA
_6097
mRNA
_6098
mRNA
_6099
mRNA
_6100
mRNA
_6101
14465
14466
14467
14468
14469
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose
+0.2
+0.1
N.D.
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
+0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.0
N.D.
+0.1
+0.3
auxotrophy
Dropout Complete
+0.4
+0.4
N.D.
-0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.5
N.D.
+0.7
+0.1
growth on ypd
YPD
-0.0
-0.1
N.D.
+0.7
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
N.D.
+0.4
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.4
N.D.
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
N.D.
+0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.2
N.D.
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
N.D.
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
N.D.
+0.6
+0.5
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