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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14469 and 14470 are separated by 640 nucleotides
14470 and 14471 are separated by 573 nucleotides
14471 and 14472 are separated by 363 nucleotides
14472 and 14473 are separated by 137 nucleotides
mRNA_6101: 14469 - KOG1303 Amino acid transporters, at 1,657,479 to 1,659,479
14469
mRNA_6102: 14470 - K14827 IPI1, TEX10 pre-rRNA-processing protein IPI1, at 1,660,120 to 1,663,221
14470
mRNA_6103: 14471 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 1,663,795 to 1,664,238
14471
mRNA_6104: 14472 - Hypothetical Protein, at 1,664,602 to 1,665,579
14472
mRNA_6105: 14473 - Hypothetical Protein, at 1,665,717 to 1,666,372
14473
Group
Condition
mRNA
_6101
mRNA
_6102
mRNA
_6103
mRNA
_6104
mRNA
_6105
14469
14470
14471
14472
14473
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-1.4
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-1.1
-0.6
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
-0.5
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.6
-0.4
-0.0
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.3
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.4
-0.1
-0.0
auxotrophy
YNB Glucose
-0.3
N.D.
-0.4
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.3
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.4
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.8
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
-0.6
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.5
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
-0.2
+0.5
-0.1
auxotrophy
Dropout Complete
-0.3
N.D.
-0.4
+0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.3
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.2
-0.0
-0.1
growth on ypd
YPD
+0.0
N.D.
+0.2
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.6
-0.1
+0.1
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