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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14475 and 14476 are separated by 226 nucleotides
14476 and 14477 are separated by 1086 nucleotides
14477 and 14478 are separated by 440 nucleotides
14478 and 14479 are separated by 291 nucleotides
mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3,990 to 10,005
14475
mRNA_6108: 14476 - Hypothetical Protein, at 10,232 to 11,111
14476
mRNA_6109: 14477 - KOG1477 SPRY domain-containing proteins, at 12,198 to 14,626
14477
mRNA_6110: 14478 - Hypothetical Protein, at 15,067 to 15,769
14478
mRNA_6111: 14479 - Hypothetical Protein, at 16,061 to 17,629
14479
Group
Condition
mRNA
_6107
mRNA
_6108
mRNA
_6109
mRNA
_6110
mRNA
_6111
14475
14476
14477
14478
14479
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
-0.3
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.1
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
+0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.5
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
+0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.0
+0.1
+0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.3
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
-0.0
-0.2
-0.3
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.4
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.4
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.2
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.1
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.6
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.0
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.3
-0.5
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.2
+0.6
+0.1
growth on ypd
YPD
N.D.
+0.1
-0.0
+0.5
+0.3
auxotrophy
Dropout Complete
N.D.
+0.3
+0.1
+0.1
+0.6
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