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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14477 and 14478 are separated by 440 nucleotides
14478 and 14479 are separated by 291 nucleotides
14479 and 14480 are separated by 84 nucleotides
14480 and 14481 are separated by 127 nucleotides
mRNA_6109: 14477 - KOG1477 SPRY domain-containing proteins, at 12,198 to 14,626
14477
mRNA_6110: 14478 - Hypothetical Protein, at 15,067 to 15,769
14478
mRNA_6111: 14479 - Hypothetical Protein, at 16,061 to 17,629
14479
mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17,714 to 19,844
14480
mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19,972 to 24,805
14481
Group
Condition
mRNA
_6109
mRNA
_6110
mRNA
_6111
mRNA
_6112
mRNA
_6113
14477
14478
14479
14480
14481
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-0.6
-0.0
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-0.4
+0.2
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.2
-0.2
+0.0
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.5
+0.1
+0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose
-0.2
-0.3
+0.5
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
-0.2
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.4
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.4
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.1
-0.2
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.5
+0.3
-0.1
+0.4
auxotrophy
Dropout Complete
+0.1
+0.1
+0.6
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
+0.2
+0.4
-0.0
growth on ypd
YPD
-0.0
+0.5
+0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
+0.1
-0.0
+0.7
growth on oleic acid
YNB Glucose
+0.0
+0.3
+0.2
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
+0.2
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.6
+0.1
+0.2
+0.1
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