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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14483 and 14484 are separated by 400 nucleotides
14484 and 14485 are separated by 603 nucleotides
14485 and 14486 are separated by 449 nucleotides
14486 and 14487 are separated by 176 nucleotides
mRNA_6115: 14483 - Hypothetical Protein, at 26,459 to 27,455
14483
mRNA_6116: 14484 - Hypothetical Protein, at 27,856 to 28,790
14484
mRNA_6117: 14485 - BLAST expressed protein [Schizophyllum commune H4-8], at 29,394 to 30,967
14485
mRNA_6118: 14486 - K03164 TOP2 DNA topoisomerase II, at 31,417 to 38,158
14486
mRNA_6119: 14487 - K15280 SLC35C2 solute carrier family 35, member C2, at 38,335 to 41,391
14487
Group
Condition
mRNA
_6115
mRNA
_6116
mRNA
_6117
mRNA
_6118
mRNA
_6119
14483
14484
14485
14486
14487
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.3
N.D.
-1.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
-0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
-0.3
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.3
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.2
N.D.
-0.1
growth on ypd
YPD
+0.2
+0.1
-0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.5
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
-0.1
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.0
N.D.
-0.0
auxotrophy
YNB Glucose
-0.1
+0.4
-0.0
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
-0.0
N.D.
+0.1
auxotrophy
Dropout Complete
+0.3
+0.5
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
+0.6
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.5
+0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.3
N.D.
+0.4
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