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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14487 and 14488 are separated by 149 nucleotides
14488 and 14489 are separated by 6297 nucleotides
14489 and 14490 are separated by 2521 nucleotides
14490 and 14491 are separated by 464 nucleotides
mRNA_6119: 14487 - K15280 SLC35C2 solute carrier family 35, member C2, at 38,335 to 41,391
14487
mRNA_6120: 14488 - K05954 FNTB protein farnesyltransferase subunit beta, at 41,541 to 43,349
14488
mRNA_6121: 14489 - KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family, at 49,647 to 51,616
14489
mRNA_6122: 14490 - SUPERFAMILY--SSF53098, at 54,138 to 56,327
14490
mRNA_6123: 14491 - BLAST DNA polymerase [Rhizoctonia solani], at 56,792 to 57,276
14491
Group
Condition
mRNA
_6119
mRNA
_6120
mRNA
_6121
mRNA
_6122
mRNA
_6123
14487
14488
14489
14490
14491
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-1.3
-0.3
-0.6
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.4
-0.4
-1.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
+0.5
-0.8
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
N.D.
-0.7
+0.8
-0.6
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.3
-0.2
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.5
-0.7
-1.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.4
-0.2
-1.5
auxotrophy
Dropout Complete
-0.1
N.D.
+0.1
-0.2
-1.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.4
-0.1
-1.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.0
-0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.2
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.5
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.1
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.7
-0.3
+1.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.4
+0.1
growth on ypd
YPD
+0.1
N.D.
-0.4
-0.0
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
-0.6
+0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
-0.3
+0.3
+1.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.2
+0.2
+1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.5
+0.5
+1.5
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