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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14489 and 14490 are separated by 2521 nucleotides
14490 and 14491 are separated by 464 nucleotides
14491 and 14492 are separated by 171 nucleotides
14492 and 14493 are separated by 3414 nucleotides
mRNA_6121: 14489 - KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family, at 49,647 to 51,616
14489
mRNA_6122: 14490 - SUPERFAMILY--SSF53098, at 54,138 to 56,327
14490
mRNA_6123: 14491 - BLAST DNA polymerase [Rhizoctonia solani], at 56,792 to 57,276
14491
mRNA_6124: 14492 - Hypothetical Protein, at 57,448 to 58,239
14492
mRNA_6125: 14493 - KOG1477 SPRY domain-containing proteins, at 61,654 to 62,774
14493
Group
Condition
mRNA
_6121
mRNA
_6122
mRNA
_6123
mRNA
_6124
mRNA
_6125
14489
14490
14491
14492
14493
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.3
-0.6
-0.2
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.8
-0.6
-0.1
-2.3
growth on ricinoleic acid
YNB Glucose
+0.4
-0.4
-1.9
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-1.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
-1.5
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.7
-1.2
+0.2
-0.3
growth on oleic acid
YNB Glucose
-0.0
-0.7
+0.1
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.8
-1.1
-0.0
+0.4
auxotrophy
YNB Glucose
+0.4
-0.1
-1.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.3
+1.2
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.3
+0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.5
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
+0.7
-0.2
-0.4
auxotrophy
Dropout Complete
+0.1
-0.2
-1.1
+0.4
+0.6
growth on ypd
YPD
-0.4
-0.0
+1.0
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.3
-0.2
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.4
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.5
+1.5
-0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.2
+0.0
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
+1.4
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+1.0
-0.0
+0.4
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