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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14497 and 14498 are separated by 91 nucleotides
14498 and 14499 are separated by 511 nucleotides
14499 and 14500 are separated by 316 nucleotides
14500 and 14501 are separated by 923 nucleotides
mRNA_6129: 14497 - Hypothetical Protein, at 71,681 to 73,838
14497
mRNA_6130: 14498 - K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2, at 73,930 to 78,529
14498
mRNA_6131: 14499 - K01057 PGLS, pgl, devB 6-phosphogluconolactonase, at 79,041 to 80,063
14499
mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80,380 to 84,392
14500
mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85,316 to 87,118
14501
Group
Condition
mRNA
_6129
mRNA
_6130
mRNA
_6131
mRNA
_6132
mRNA
_6133
14497
14498
14499
14500
14501
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.8
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.1
N.D.
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.5
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.4
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.7
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.3
-0.2
auxotrophy
YNB Glucose
-0.4
-0.4
N.D.
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.3
-0.1
N.D.
-0.3
+0.1
growth on ypd
YPD
-0.6
-0.0
N.D.
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.8
N.D.
+0.3
+0.1
auxotrophy
Dropout Complete
-0.6
-0.1
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.0
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.3
N.D.
-0.1
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.7
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.8
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+1.2
N.D.
-0.2
-0.2
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