Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14500 and 14501 are separated by 923 nucleotides14501 and 14502 are separated by 941 nucleotides14502 and 14503 are separated by 490 nucleotides14503 and 14504 are separated by 215 nucleotides mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80,380 to 84,392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85,316 to 87,118 14501 mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88,060 to 89,781 14502 mRNA_6135: 14503 - K08614 ADAM28 disintegrin and metalloproteinase domain-containing protein 28, at 90,272 to 93,233 14503 mRNA_6136: 14504 - Hypothetical Protein, at 93,449 to 95,989 14504
Group Condition mRNA_6132 mRNA_6133 mRNA_6134 mRNA_6135 mRNA_6136
14500 14501 14502 14503 14504
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.2 N.D. -0.2 -0.4
auxotrophy YNB Glucose 75mM Arginine -0.3 -0.2 N.D. -0.2 -0.1
growth on oleic acid YNB Glucose -0.3 +0.1 N.D. -0.0 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.1 N.D. +0.0 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.2 N.D. +0.4 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.1 N.D. -0.1 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 +0.1 N.D. +0.4 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.0 N.D. +0.0 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.2 N.D. +0.1 -0.1
growth on ypd YPD -0.3 +0.3 N.D. +0.0 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 -0.2 N.D. +0.2 +0.4
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.1 N.D. +0.3 +0.1
growth on oleic acid YNB Oleic Acid -0.3 +0.3 N.D. +0.1 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.0 N.D. +0.0 -0.1
growth on ricinoleic acid YNB Glucose -0.2 +0.3 N.D. -0.0 +0.1
auxotrophy YNB Glucose +0.2 +0.0 N.D. -0.1 +0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 N.D. +0.1 +0.1
auxotrophy Dropout Complete +0.2 +0.0 N.D. +0.1 +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.1 N.D. -0.2 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.4 N.D. +0.1 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 -0.2 N.D. +0.7 +0.1
remove
mRNA_6132
plot
remove
mRNA_6133
plot
remove
mRNA_6134
remove
mRNA_6135
plot
remove
mRNA_6136
plot