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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14505 and 14506 are separated by 365 nucleotides
14506 and 14507 are separated by 558 nucleotides
14507 and 14508 are separated by 1291 nucleotides
14508 and 14509 are separated by 1105 nucleotides
mRNA_6137: 14505 - KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase, at 96,783 to 98,967
14505
mRNA_6138: 14506 - Hypothetical Protein, at 99,333 to 99,963
14506
mRNA_6139: 14507 - Hypothetical Protein, at 100,522 to 101,155
14507
mRNA_6140: 14508 - K20463 OSBPL3_6_7, ORP3_6_7 oxysterol-binding protein-related protein 3/6/7, at 102,447 to 105,557
14508
mRNA_6141: 14509 - HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670, at 106,663 to 106,926
14509
Group
Condition
mRNA
_6137
mRNA
_6138
mRNA
_6139
mRNA
_6140
mRNA
_6141
14505
14506
14507
14508
14509
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.6
+0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.6
+0.1
-1.9
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
+0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.3
-0.0
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
+0.3
-0.2
+0.3
growth on ypd
YPD
N.D.
+0.6
+0.3
+0.0
-0.8
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.4
-0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.4
+0.1
+0.7
auxotrophy
YNB Glucose
N.D.
+0.4
-0.7
+0.0
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.7
-0.4
-0.3
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.9
-0.2
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.0
+0.2
+0.6
growth on oleic acid
YNB Glucose
N.D.
+0.5
-0.2
+0.1
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.7
+0.2
+1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.9
-0.3
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.1
-0.1
+0.6
auxotrophy
Dropout Complete
N.D.
+0.9
-0.3
-0.1
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.1
-0.2
-0.3
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+1.0
+0.3
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
-0.5
+0.3
+1.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.5
+0.3
+0.9
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