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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14507 and 14508 are separated by 1291 nucleotides
14508 and 14509 are separated by 1105 nucleotides
14509 and 14510 are separated by 812 nucleotides
14510 and 14511 are separated by 163 nucleotides
mRNA_6139: 14507 - Hypothetical Protein, at 100,522 to 101,155
14507
mRNA_6140: 14508 - K20463 OSBPL3_6_7, ORP3_6_7 oxysterol-binding protein-related protein 3/6/7, at 102,447 to 105,557
14508
mRNA_6141: 14509 - HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670, at 106,663 to 106,926
14509
mRNA_6142: 14510 - Hypothetical Protein, at 107,739 to 108,173
14510
mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108,337 to 111,111
14511
Group
Condition
mRNA
_6139
mRNA
_6140
mRNA
_6141
mRNA
_6142
mRNA
_6143
14507
14508
14509
14510
14511
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-1.9
-0.5
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.3
+0.7
-0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
-0.6
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.6
+0.0
-0.3
+0.5
-0.2
growth on ypd
YPD
+0.3
+0.0
-0.8
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
-0.4
-0.3
+0.0
auxotrophy
Dropout Complete
-0.3
-0.1
+0.8
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.6
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.6
-0.1
-0.3
auxotrophy
YNB Glucose
-0.7
+0.0
+1.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
-0.4
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.3
+1.2
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.2
+1.4
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.6
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
+0.6
+0.7
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
+0.7
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.9
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
+0.3
+0.7
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
+0.9
-0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.3
+0.7
+0.1
-0.4
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